|
- // Code generated by protoc-gen-go. DO NOT EDIT.
- // source: google/genomics/v1/references.proto
-
- package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
-
- import proto "github.com/golang/protobuf/proto"
- import fmt "fmt"
- import math "math"
- import _ "google.golang.org/genproto/googleapis/api/annotations"
-
- import (
- context "golang.org/x/net/context"
- grpc "google.golang.org/grpc"
- )
-
- // Reference imports to suppress errors if they are not otherwise used.
- var _ = proto.Marshal
- var _ = fmt.Errorf
- var _ = math.Inf
-
- // This is a compile-time assertion to ensure that this generated file
- // is compatible with the proto package it is being compiled against.
- // A compilation error at this line likely means your copy of the
- // proto package needs to be updated.
- const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
-
- // A reference is a canonical assembled DNA sequence, intended to act as a
- // reference coordinate space for other genomic annotations. A single reference
- // might represent the human chromosome 1 or mitochandrial DNA, for instance. A
- // reference belongs to one or more reference sets.
- //
- // For more genomics resource definitions, see [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- type Reference struct {
- // The server-generated reference ID, unique across all references.
- Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
- // The length of this reference's sequence.
- Length int64 `protobuf:"varint,2,opt,name=length,proto3" json:"length,omitempty"`
- // MD5 of the upper-case sequence excluding all whitespace characters (this
- // is equivalent to SQ:M5 in SAM). This value is represented in lower case
- // hexadecimal format.
- Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
- // The name of this reference, for example `22`.
- Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
- // The URI from which the sequence was obtained. Typically specifies a FASTA
- // format file.
- SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
- // All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
- // with a version number, for example `GCF_000001405.26`.
- SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
- // ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
- NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *Reference) Reset() { *m = Reference{} }
- func (m *Reference) String() string { return proto.CompactTextString(m) }
- func (*Reference) ProtoMessage() {}
- func (*Reference) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{0}
- }
- func (m *Reference) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_Reference.Unmarshal(m, b)
- }
- func (m *Reference) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_Reference.Marshal(b, m, deterministic)
- }
- func (dst *Reference) XXX_Merge(src proto.Message) {
- xxx_messageInfo_Reference.Merge(dst, src)
- }
- func (m *Reference) XXX_Size() int {
- return xxx_messageInfo_Reference.Size(m)
- }
- func (m *Reference) XXX_DiscardUnknown() {
- xxx_messageInfo_Reference.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_Reference proto.InternalMessageInfo
-
- func (m *Reference) GetId() string {
- if m != nil {
- return m.Id
- }
- return ""
- }
-
- func (m *Reference) GetLength() int64 {
- if m != nil {
- return m.Length
- }
- return 0
- }
-
- func (m *Reference) GetMd5Checksum() string {
- if m != nil {
- return m.Md5Checksum
- }
- return ""
- }
-
- func (m *Reference) GetName() string {
- if m != nil {
- return m.Name
- }
- return ""
- }
-
- func (m *Reference) GetSourceUri() string {
- if m != nil {
- return m.SourceUri
- }
- return ""
- }
-
- func (m *Reference) GetSourceAccessions() []string {
- if m != nil {
- return m.SourceAccessions
- }
- return nil
- }
-
- func (m *Reference) GetNcbiTaxonId() int32 {
- if m != nil {
- return m.NcbiTaxonId
- }
- return 0
- }
-
- // A reference set is a set of references which typically comprise a reference
- // assembly for a species, such as `GRCh38` which is representative
- // of the human genome. A reference set defines a common coordinate space for
- // comparing reference-aligned experimental data. A reference set contains 1 or
- // more references.
- //
- // For more genomics resource definitions, see [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- type ReferenceSet struct {
- // The server-generated reference set ID, unique across all reference sets.
- Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
- // The IDs of the reference objects that are part of this set.
- // `Reference.md5checksum` must be unique within this set.
- ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds,proto3" json:"reference_ids,omitempty"`
- // Order-independent MD5 checksum which identifies this reference set. The
- // checksum is computed by sorting all lower case hexidecimal string
- // `reference.md5checksum` (for all reference in this set) in
- // ascending lexicographic order, concatenating, and taking the MD5 of that
- // value. The resulting value is represented in lower case hexadecimal format.
- Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
- // ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
- // indicating the species which this reference set is intended to model. Note
- // that contained references may specify a different `ncbiTaxonId`, as
- // assemblies may contain reference sequences which do not belong to the
- // modeled species, for example EBV in a human reference genome.
- NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
- // Free text description of this reference set.
- Description string `protobuf:"bytes,5,opt,name=description,proto3" json:"description,omitempty"`
- // Public id of this reference set, such as `GRCh37`.
- AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
- // The URI from which the references were obtained.
- SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
- // All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
- // with a version number, for example `NC_000001.11`.
- SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *ReferenceSet) Reset() { *m = ReferenceSet{} }
- func (m *ReferenceSet) String() string { return proto.CompactTextString(m) }
- func (*ReferenceSet) ProtoMessage() {}
- func (*ReferenceSet) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{1}
- }
- func (m *ReferenceSet) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_ReferenceSet.Unmarshal(m, b)
- }
- func (m *ReferenceSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_ReferenceSet.Marshal(b, m, deterministic)
- }
- func (dst *ReferenceSet) XXX_Merge(src proto.Message) {
- xxx_messageInfo_ReferenceSet.Merge(dst, src)
- }
- func (m *ReferenceSet) XXX_Size() int {
- return xxx_messageInfo_ReferenceSet.Size(m)
- }
- func (m *ReferenceSet) XXX_DiscardUnknown() {
- xxx_messageInfo_ReferenceSet.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_ReferenceSet proto.InternalMessageInfo
-
- func (m *ReferenceSet) GetId() string {
- if m != nil {
- return m.Id
- }
- return ""
- }
-
- func (m *ReferenceSet) GetReferenceIds() []string {
- if m != nil {
- return m.ReferenceIds
- }
- return nil
- }
-
- func (m *ReferenceSet) GetMd5Checksum() string {
- if m != nil {
- return m.Md5Checksum
- }
- return ""
- }
-
- func (m *ReferenceSet) GetNcbiTaxonId() int32 {
- if m != nil {
- return m.NcbiTaxonId
- }
- return 0
- }
-
- func (m *ReferenceSet) GetDescription() string {
- if m != nil {
- return m.Description
- }
- return ""
- }
-
- func (m *ReferenceSet) GetAssemblyId() string {
- if m != nil {
- return m.AssemblyId
- }
- return ""
- }
-
- func (m *ReferenceSet) GetSourceUri() string {
- if m != nil {
- return m.SourceUri
- }
- return ""
- }
-
- func (m *ReferenceSet) GetSourceAccessions() []string {
- if m != nil {
- return m.SourceAccessions
- }
- return nil
- }
-
- type SearchReferenceSetsRequest struct {
- // If present, return reference sets for which the
- // [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly.
- Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
- // If present, return reference sets for which a prefix of any of
- // [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions]
- // match any of these strings. Accession numbers typically have a main number
- // and a version, for example `NC_000001.11`.
- Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
- // If present, return reference sets for which a substring of their
- // `assemblyId` matches this string (case insensitive).
- AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
- // The continuation token, which is used to page through large result sets.
- // To get the next page of results, set this parameter to the value of
- // `nextPageToken` from the previous response.
- PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
- // The maximum number of results to return in a single page. If unspecified,
- // defaults to 1024. The maximum value is 4096.
- PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *SearchReferenceSetsRequest) Reset() { *m = SearchReferenceSetsRequest{} }
- func (m *SearchReferenceSetsRequest) String() string { return proto.CompactTextString(m) }
- func (*SearchReferenceSetsRequest) ProtoMessage() {}
- func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{2}
- }
- func (m *SearchReferenceSetsRequest) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_SearchReferenceSetsRequest.Unmarshal(m, b)
- }
- func (m *SearchReferenceSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_SearchReferenceSetsRequest.Marshal(b, m, deterministic)
- }
- func (dst *SearchReferenceSetsRequest) XXX_Merge(src proto.Message) {
- xxx_messageInfo_SearchReferenceSetsRequest.Merge(dst, src)
- }
- func (m *SearchReferenceSetsRequest) XXX_Size() int {
- return xxx_messageInfo_SearchReferenceSetsRequest.Size(m)
- }
- func (m *SearchReferenceSetsRequest) XXX_DiscardUnknown() {
- xxx_messageInfo_SearchReferenceSetsRequest.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_SearchReferenceSetsRequest proto.InternalMessageInfo
-
- func (m *SearchReferenceSetsRequest) GetMd5Checksums() []string {
- if m != nil {
- return m.Md5Checksums
- }
- return nil
- }
-
- func (m *SearchReferenceSetsRequest) GetAccessions() []string {
- if m != nil {
- return m.Accessions
- }
- return nil
- }
-
- func (m *SearchReferenceSetsRequest) GetAssemblyId() string {
- if m != nil {
- return m.AssemblyId
- }
- return ""
- }
-
- func (m *SearchReferenceSetsRequest) GetPageToken() string {
- if m != nil {
- return m.PageToken
- }
- return ""
- }
-
- func (m *SearchReferenceSetsRequest) GetPageSize() int32 {
- if m != nil {
- return m.PageSize
- }
- return 0
- }
-
- type SearchReferenceSetsResponse struct {
- // The matching references sets.
- ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets,proto3" json:"reference_sets,omitempty"`
- // The continuation token, which is used to page through large result sets.
- // Provide this value in a subsequent request to return the next page of
- // results. This field will be empty if there aren't any additional results.
- NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *SearchReferenceSetsResponse) Reset() { *m = SearchReferenceSetsResponse{} }
- func (m *SearchReferenceSetsResponse) String() string { return proto.CompactTextString(m) }
- func (*SearchReferenceSetsResponse) ProtoMessage() {}
- func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{3}
- }
- func (m *SearchReferenceSetsResponse) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_SearchReferenceSetsResponse.Unmarshal(m, b)
- }
- func (m *SearchReferenceSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_SearchReferenceSetsResponse.Marshal(b, m, deterministic)
- }
- func (dst *SearchReferenceSetsResponse) XXX_Merge(src proto.Message) {
- xxx_messageInfo_SearchReferenceSetsResponse.Merge(dst, src)
- }
- func (m *SearchReferenceSetsResponse) XXX_Size() int {
- return xxx_messageInfo_SearchReferenceSetsResponse.Size(m)
- }
- func (m *SearchReferenceSetsResponse) XXX_DiscardUnknown() {
- xxx_messageInfo_SearchReferenceSetsResponse.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_SearchReferenceSetsResponse proto.InternalMessageInfo
-
- func (m *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet {
- if m != nil {
- return m.ReferenceSets
- }
- return nil
- }
-
- func (m *SearchReferenceSetsResponse) GetNextPageToken() string {
- if m != nil {
- return m.NextPageToken
- }
- return ""
- }
-
- type GetReferenceSetRequest struct {
- // The ID of the reference set.
- ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *GetReferenceSetRequest) Reset() { *m = GetReferenceSetRequest{} }
- func (m *GetReferenceSetRequest) String() string { return proto.CompactTextString(m) }
- func (*GetReferenceSetRequest) ProtoMessage() {}
- func (*GetReferenceSetRequest) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{4}
- }
- func (m *GetReferenceSetRequest) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_GetReferenceSetRequest.Unmarshal(m, b)
- }
- func (m *GetReferenceSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_GetReferenceSetRequest.Marshal(b, m, deterministic)
- }
- func (dst *GetReferenceSetRequest) XXX_Merge(src proto.Message) {
- xxx_messageInfo_GetReferenceSetRequest.Merge(dst, src)
- }
- func (m *GetReferenceSetRequest) XXX_Size() int {
- return xxx_messageInfo_GetReferenceSetRequest.Size(m)
- }
- func (m *GetReferenceSetRequest) XXX_DiscardUnknown() {
- xxx_messageInfo_GetReferenceSetRequest.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_GetReferenceSetRequest proto.InternalMessageInfo
-
- func (m *GetReferenceSetRequest) GetReferenceSetId() string {
- if m != nil {
- return m.ReferenceSetId
- }
- return ""
- }
-
- type SearchReferencesRequest struct {
- // If present, return references for which the
- // [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly.
- Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
- // If present, return references for which a prefix of any of
- // [sourceAccessions][google.genomics.v1.Reference.source_accessions] match
- // any of these strings. Accession numbers typically have a main number and a
- // version, for example `GCF_000001405.26`.
- Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
- // If present, return only references which belong to this reference set.
- ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
- // The continuation token, which is used to page through large result sets.
- // To get the next page of results, set this parameter to the value of
- // `nextPageToken` from the previous response.
- PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
- // The maximum number of results to return in a single page. If unspecified,
- // defaults to 1024. The maximum value is 4096.
- PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *SearchReferencesRequest) Reset() { *m = SearchReferencesRequest{} }
- func (m *SearchReferencesRequest) String() string { return proto.CompactTextString(m) }
- func (*SearchReferencesRequest) ProtoMessage() {}
- func (*SearchReferencesRequest) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{5}
- }
- func (m *SearchReferencesRequest) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_SearchReferencesRequest.Unmarshal(m, b)
- }
- func (m *SearchReferencesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_SearchReferencesRequest.Marshal(b, m, deterministic)
- }
- func (dst *SearchReferencesRequest) XXX_Merge(src proto.Message) {
- xxx_messageInfo_SearchReferencesRequest.Merge(dst, src)
- }
- func (m *SearchReferencesRequest) XXX_Size() int {
- return xxx_messageInfo_SearchReferencesRequest.Size(m)
- }
- func (m *SearchReferencesRequest) XXX_DiscardUnknown() {
- xxx_messageInfo_SearchReferencesRequest.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_SearchReferencesRequest proto.InternalMessageInfo
-
- func (m *SearchReferencesRequest) GetMd5Checksums() []string {
- if m != nil {
- return m.Md5Checksums
- }
- return nil
- }
-
- func (m *SearchReferencesRequest) GetAccessions() []string {
- if m != nil {
- return m.Accessions
- }
- return nil
- }
-
- func (m *SearchReferencesRequest) GetReferenceSetId() string {
- if m != nil {
- return m.ReferenceSetId
- }
- return ""
- }
-
- func (m *SearchReferencesRequest) GetPageToken() string {
- if m != nil {
- return m.PageToken
- }
- return ""
- }
-
- func (m *SearchReferencesRequest) GetPageSize() int32 {
- if m != nil {
- return m.PageSize
- }
- return 0
- }
-
- type SearchReferencesResponse struct {
- // The matching references.
- References []*Reference `protobuf:"bytes,1,rep,name=references,proto3" json:"references,omitempty"`
- // The continuation token, which is used to page through large result sets.
- // Provide this value in a subsequent request to return the next page of
- // results. This field will be empty if there aren't any additional results.
- NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *SearchReferencesResponse) Reset() { *m = SearchReferencesResponse{} }
- func (m *SearchReferencesResponse) String() string { return proto.CompactTextString(m) }
- func (*SearchReferencesResponse) ProtoMessage() {}
- func (*SearchReferencesResponse) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{6}
- }
- func (m *SearchReferencesResponse) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_SearchReferencesResponse.Unmarshal(m, b)
- }
- func (m *SearchReferencesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_SearchReferencesResponse.Marshal(b, m, deterministic)
- }
- func (dst *SearchReferencesResponse) XXX_Merge(src proto.Message) {
- xxx_messageInfo_SearchReferencesResponse.Merge(dst, src)
- }
- func (m *SearchReferencesResponse) XXX_Size() int {
- return xxx_messageInfo_SearchReferencesResponse.Size(m)
- }
- func (m *SearchReferencesResponse) XXX_DiscardUnknown() {
- xxx_messageInfo_SearchReferencesResponse.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_SearchReferencesResponse proto.InternalMessageInfo
-
- func (m *SearchReferencesResponse) GetReferences() []*Reference {
- if m != nil {
- return m.References
- }
- return nil
- }
-
- func (m *SearchReferencesResponse) GetNextPageToken() string {
- if m != nil {
- return m.NextPageToken
- }
- return ""
- }
-
- type GetReferenceRequest struct {
- // The ID of the reference.
- ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *GetReferenceRequest) Reset() { *m = GetReferenceRequest{} }
- func (m *GetReferenceRequest) String() string { return proto.CompactTextString(m) }
- func (*GetReferenceRequest) ProtoMessage() {}
- func (*GetReferenceRequest) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{7}
- }
- func (m *GetReferenceRequest) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_GetReferenceRequest.Unmarshal(m, b)
- }
- func (m *GetReferenceRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_GetReferenceRequest.Marshal(b, m, deterministic)
- }
- func (dst *GetReferenceRequest) XXX_Merge(src proto.Message) {
- xxx_messageInfo_GetReferenceRequest.Merge(dst, src)
- }
- func (m *GetReferenceRequest) XXX_Size() int {
- return xxx_messageInfo_GetReferenceRequest.Size(m)
- }
- func (m *GetReferenceRequest) XXX_DiscardUnknown() {
- xxx_messageInfo_GetReferenceRequest.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_GetReferenceRequest proto.InternalMessageInfo
-
- func (m *GetReferenceRequest) GetReferenceId() string {
- if m != nil {
- return m.ReferenceId
- }
- return ""
- }
-
- type ListBasesRequest struct {
- // The ID of the reference.
- ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
- // The start position (0-based) of this query. Defaults to 0.
- Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
- // The end position (0-based, exclusive) of this query. Defaults to the length
- // of this reference.
- End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
- // The continuation token, which is used to page through large result sets.
- // To get the next page of results, set this parameter to the value of
- // `nextPageToken` from the previous response.
- PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
- // The maximum number of bases to return in a single page. If unspecified,
- // defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
- // pairs).
- PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *ListBasesRequest) Reset() { *m = ListBasesRequest{} }
- func (m *ListBasesRequest) String() string { return proto.CompactTextString(m) }
- func (*ListBasesRequest) ProtoMessage() {}
- func (*ListBasesRequest) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{8}
- }
- func (m *ListBasesRequest) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_ListBasesRequest.Unmarshal(m, b)
- }
- func (m *ListBasesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_ListBasesRequest.Marshal(b, m, deterministic)
- }
- func (dst *ListBasesRequest) XXX_Merge(src proto.Message) {
- xxx_messageInfo_ListBasesRequest.Merge(dst, src)
- }
- func (m *ListBasesRequest) XXX_Size() int {
- return xxx_messageInfo_ListBasesRequest.Size(m)
- }
- func (m *ListBasesRequest) XXX_DiscardUnknown() {
- xxx_messageInfo_ListBasesRequest.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_ListBasesRequest proto.InternalMessageInfo
-
- func (m *ListBasesRequest) GetReferenceId() string {
- if m != nil {
- return m.ReferenceId
- }
- return ""
- }
-
- func (m *ListBasesRequest) GetStart() int64 {
- if m != nil {
- return m.Start
- }
- return 0
- }
-
- func (m *ListBasesRequest) GetEnd() int64 {
- if m != nil {
- return m.End
- }
- return 0
- }
-
- func (m *ListBasesRequest) GetPageToken() string {
- if m != nil {
- return m.PageToken
- }
- return ""
- }
-
- func (m *ListBasesRequest) GetPageSize() int32 {
- if m != nil {
- return m.PageSize
- }
- return 0
- }
-
- type ListBasesResponse struct {
- // The offset position (0-based) of the given `sequence` from the
- // start of this `Reference`. This value will differ for each page
- // in a paginated request.
- Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
- // A substring of the bases that make up this reference.
- Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
- // The continuation token, which is used to page through large result sets.
- // Provide this value in a subsequent request to return the next page of
- // results. This field will be empty if there aren't any additional results.
- NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
- XXX_NoUnkeyedLiteral struct{} `json:"-"`
- XXX_unrecognized []byte `json:"-"`
- XXX_sizecache int32 `json:"-"`
- }
-
- func (m *ListBasesResponse) Reset() { *m = ListBasesResponse{} }
- func (m *ListBasesResponse) String() string { return proto.CompactTextString(m) }
- func (*ListBasesResponse) ProtoMessage() {}
- func (*ListBasesResponse) Descriptor() ([]byte, []int) {
- return fileDescriptor_references_5de88386bc96d288, []int{9}
- }
- func (m *ListBasesResponse) XXX_Unmarshal(b []byte) error {
- return xxx_messageInfo_ListBasesResponse.Unmarshal(m, b)
- }
- func (m *ListBasesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
- return xxx_messageInfo_ListBasesResponse.Marshal(b, m, deterministic)
- }
- func (dst *ListBasesResponse) XXX_Merge(src proto.Message) {
- xxx_messageInfo_ListBasesResponse.Merge(dst, src)
- }
- func (m *ListBasesResponse) XXX_Size() int {
- return xxx_messageInfo_ListBasesResponse.Size(m)
- }
- func (m *ListBasesResponse) XXX_DiscardUnknown() {
- xxx_messageInfo_ListBasesResponse.DiscardUnknown(m)
- }
-
- var xxx_messageInfo_ListBasesResponse proto.InternalMessageInfo
-
- func (m *ListBasesResponse) GetOffset() int64 {
- if m != nil {
- return m.Offset
- }
- return 0
- }
-
- func (m *ListBasesResponse) GetSequence() string {
- if m != nil {
- return m.Sequence
- }
- return ""
- }
-
- func (m *ListBasesResponse) GetNextPageToken() string {
- if m != nil {
- return m.NextPageToken
- }
- return ""
- }
-
- func init() {
- proto.RegisterType((*Reference)(nil), "google.genomics.v1.Reference")
- proto.RegisterType((*ReferenceSet)(nil), "google.genomics.v1.ReferenceSet")
- proto.RegisterType((*SearchReferenceSetsRequest)(nil), "google.genomics.v1.SearchReferenceSetsRequest")
- proto.RegisterType((*SearchReferenceSetsResponse)(nil), "google.genomics.v1.SearchReferenceSetsResponse")
- proto.RegisterType((*GetReferenceSetRequest)(nil), "google.genomics.v1.GetReferenceSetRequest")
- proto.RegisterType((*SearchReferencesRequest)(nil), "google.genomics.v1.SearchReferencesRequest")
- proto.RegisterType((*SearchReferencesResponse)(nil), "google.genomics.v1.SearchReferencesResponse")
- proto.RegisterType((*GetReferenceRequest)(nil), "google.genomics.v1.GetReferenceRequest")
- proto.RegisterType((*ListBasesRequest)(nil), "google.genomics.v1.ListBasesRequest")
- proto.RegisterType((*ListBasesResponse)(nil), "google.genomics.v1.ListBasesResponse")
- }
-
- // Reference imports to suppress errors if they are not otherwise used.
- var _ context.Context
- var _ grpc.ClientConn
-
- // This is a compile-time assertion to ensure that this generated file
- // is compatible with the grpc package it is being compiled against.
- const _ = grpc.SupportPackageIsVersion4
-
- // ReferenceServiceV1Client is the client API for ReferenceServiceV1 service.
- //
- // For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
- type ReferenceServiceV1Client interface {
- // Searches for reference sets which match the given criteria.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
- SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error)
- // Gets a reference set.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
- GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error)
- // Searches for references which match the given criteria.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
- SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error)
- // Gets a reference.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
- GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error)
- // Lists the bases in a reference, optionally restricted to a range.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
- ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error)
- }
-
- type referenceServiceV1Client struct {
- cc *grpc.ClientConn
- }
-
- func NewReferenceServiceV1Client(cc *grpc.ClientConn) ReferenceServiceV1Client {
- return &referenceServiceV1Client{cc}
- }
-
- func (c *referenceServiceV1Client) SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error) {
- out := new(SearchReferenceSetsResponse)
- err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", in, out, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
- }
-
- func (c *referenceServiceV1Client) GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error) {
- out := new(ReferenceSet)
- err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", in, out, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
- }
-
- func (c *referenceServiceV1Client) SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error) {
- out := new(SearchReferencesResponse)
- err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferences", in, out, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
- }
-
- func (c *referenceServiceV1Client) GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error) {
- out := new(Reference)
- err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReference", in, out, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
- }
-
- func (c *referenceServiceV1Client) ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error) {
- out := new(ListBasesResponse)
- err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/ListBases", in, out, opts...)
- if err != nil {
- return nil, err
- }
- return out, nil
- }
-
- // ReferenceServiceV1Server is the server API for ReferenceServiceV1 service.
- type ReferenceServiceV1Server interface {
- // Searches for reference sets which match the given criteria.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
- SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error)
- // Gets a reference set.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
- GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error)
- // Searches for references which match the given criteria.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
- SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error)
- // Gets a reference.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
- GetReference(context.Context, *GetReferenceRequest) (*Reference, error)
- // Lists the bases in a reference, optionally restricted to a range.
- //
- // For the definitions of references and other genomics resources, see
- // [Fundamentals of Google
- // Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
- //
- // Implements
- // [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
- ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error)
- }
-
- func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server) {
- s.RegisterService(&_ReferenceServiceV1_serviceDesc, srv)
- }
-
- func _ReferenceServiceV1_SearchReferenceSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(SearchReferenceSetsRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, req.(*SearchReferenceSetsRequest))
- }
- return interceptor(ctx, in, info, handler)
- }
-
- func _ReferenceServiceV1_GetReferenceSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(GetReferenceSetRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, req.(*GetReferenceSetRequest))
- }
- return interceptor(ctx, in, info, handler)
- }
-
- func _ReferenceServiceV1_SearchReferences_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(SearchReferencesRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(ReferenceServiceV1Server).SearchReferences(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferences",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(ReferenceServiceV1Server).SearchReferences(ctx, req.(*SearchReferencesRequest))
- }
- return interceptor(ctx, in, info, handler)
- }
-
- func _ReferenceServiceV1_GetReference_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(GetReferenceRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(ReferenceServiceV1Server).GetReference(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReference",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(ReferenceServiceV1Server).GetReference(ctx, req.(*GetReferenceRequest))
- }
- return interceptor(ctx, in, info, handler)
- }
-
- func _ReferenceServiceV1_ListBases_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
- in := new(ListBasesRequest)
- if err := dec(in); err != nil {
- return nil, err
- }
- if interceptor == nil {
- return srv.(ReferenceServiceV1Server).ListBases(ctx, in)
- }
- info := &grpc.UnaryServerInfo{
- Server: srv,
- FullMethod: "/google.genomics.v1.ReferenceServiceV1/ListBases",
- }
- handler := func(ctx context.Context, req interface{}) (interface{}, error) {
- return srv.(ReferenceServiceV1Server).ListBases(ctx, req.(*ListBasesRequest))
- }
- return interceptor(ctx, in, info, handler)
- }
-
- var _ReferenceServiceV1_serviceDesc = grpc.ServiceDesc{
- ServiceName: "google.genomics.v1.ReferenceServiceV1",
- HandlerType: (*ReferenceServiceV1Server)(nil),
- Methods: []grpc.MethodDesc{
- {
- MethodName: "SearchReferenceSets",
- Handler: _ReferenceServiceV1_SearchReferenceSets_Handler,
- },
- {
- MethodName: "GetReferenceSet",
- Handler: _ReferenceServiceV1_GetReferenceSet_Handler,
- },
- {
- MethodName: "SearchReferences",
- Handler: _ReferenceServiceV1_SearchReferences_Handler,
- },
- {
- MethodName: "GetReference",
- Handler: _ReferenceServiceV1_GetReference_Handler,
- },
- {
- MethodName: "ListBases",
- Handler: _ReferenceServiceV1_ListBases_Handler,
- },
- },
- Streams: []grpc.StreamDesc{},
- Metadata: "google/genomics/v1/references.proto",
- }
-
- func init() {
- proto.RegisterFile("google/genomics/v1/references.proto", fileDescriptor_references_5de88386bc96d288)
- }
-
- var fileDescriptor_references_5de88386bc96d288 = []byte{
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